GEO GSE290834: single-cell RNA-seq of explanted human lungs with CLAD-BOS and cGVHD-BOS
Single-cell RNA sequencing of explanted lungs from 4 CLAD-BOS patients, 3 chronic GVHD-BOS patients and 3 deceased controls.
As of . Primary source: GEO series GSE290834.
Summary
The GEO series record states: 10x Genomics single-cell RNA sequencing of distal lung from 4 patients with CLAD-BOS, 3 with chronic graft-versus-host disease BOS and 3 healthy controls, comparing T-cell, macrophage, epithelial and stromal transcriptomes. Status public on 10 April 2025; contact institute University of Pennsylvania; organism Homo sapiens. The record states that raw human files were not submitted to GEO because of concerns about personally identifiable sequence data.
Details
- accession
- GSE290834
- repository
- GEO
- assay
- Expression profiling by high throughput sequencing (scRNA-seq)
- n
- 10 patients or controls (21 samples listed in GEO)
- organism
- Homo sapiens
- access
- Raw human sequence files were not submitted to GEO (per the series record).
Sources and links
- GEO series GSE290834 (primary)
Related
Links from this record
- profiles: Bronchiolitis obliterans syndrome (BOS)
Linked from (derived)
Known gaps in this record
- licence or reuse terms
- link to the associated paper record (the GEO record lists a PubMed identifier that was not opened)
- data access route beyond the statement in the series record
Information resource only. Not medical advice. Not a substitute for the care of the patient's transplant team.